PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005234m
Common NameEUTSA_v10005197mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 74aa    MW: 8463.69 Da    PI: 6.5188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005234mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.7e-086402154
                     HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     ++Lr+llP+ + + +s K+s + +L+++++YI++L
  Thhalv10005234m  6 SKLRQLLPEiRERRRSDKVSASKVLQETCNYIRKL 40
                     79*******999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-8558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5640IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MIDLVSKLRQ LLPEIRERRR SDKVSASKVL QETCNYIRKL HSEVDNLSDR LSQLLDSVDE  60
DSHEAAVIRS LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005234m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246401e-82BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395335.15e-44transcription factor PRE5
SwissprotQ9LJX12e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLV4K5161e-42V4K516_EUTSA; Uncharacterized protein
TrEMBLV4MMB31e-42V4MMB3_EUTSA; Uncharacterized protein
STRINGXP_006395335.12e-43(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.17e-44bHLH family protein