PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005352m

Common Name

EUTSA_v10005352mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 176aa MW: 20482.2 Da PI: 9.368

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005352m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	79	138	1	60
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +k+++re+rk +NRe+ArrsR + ++ +e + + +L+ N++L ++l +++ k Thhalv10005352m 79 DKDDRREKRKKSNRESARRSRMKQQKHLEDVRSQFHQLKRDNRELENQLRYAMHHCQHAK 138 689*******************************************99998888888665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-9	77	136	No hit	No description
SMART	SM00338	1.3E-9	79	143	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.4E-8	80	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.105	81	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.09E-8	83	134	No hit	No description
CDD	cd14702	1.23E-14	84	135	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MMSSLSPVFS SEPALASGFT TWDASDLFTI LDDTSLCPVE VNPGPGNTNS CQIQNQCYPN 60 PGFKDKPFNQ TGLNVVLPDK DDRREKRKKS NRESARRSRM KQQKHLEDVR SQFHQLKRDN 120 RELENQLRYA MHHCQHAKIE KDRLRLEHHI LQEKLLNLRQ VLVLRQIQQS STCASW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005352m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393978.2	1e-130	basic leucine zipper 4
TrEMBL	V4KJ88	1e-129	V4KJ88_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006393978.1	1e-129	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	4e-25	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Thhalv10005352m
Entrez Gene	18013077