PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005497m
Common NameEUTSA_v10005497mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 122aa    MW: 13815 Da    PI: 8.6728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005497mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.7e-4051041100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C+kdC+++pyfp ++p kfa++h+++Ga nv+k+l++lp ++r +a++sl++eA++r++dPvyG+vg+i  lq q++++++ l
  Thhalv10005497m   5 RCAACKYLRRRCPKDCFFSPYFPPNDPDKFAYIHRIYGAGNVSKMLQQLPVQTRAEAVDSLCFEAKCRVEDPVYGCVGIIYFLQTQIQKTESLL 98 
                      6*******************************************************************************************99 PP

           DUF260  95 allkee 100
                      a++++e
  Thhalv10005497m  99 AKTQAE 104
                      999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5844105IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-395102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MNPKRCAACK YLRRRCPKDC FFSPYFPPND PDKFAYIHRI YGAGNVSKML QQLPVQTRAE  60
AVDSLCFEAK CRVEDPVYGC VGIIYFLQTQ IQKTESLLAK TQAEIAVAQI KHSQAQNSEF  120
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-36610512111LOB family transfactor Ramosa2.1
5ly0_B9e-36610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005497m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738461e-110AB473846.1 Arabidopsis thaliana ASL13 mRNA for ASYMMETRIC LEAVES2-like 13 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395539.17e-87LOB domain-containing protein 24
SwissprotP594681e-74LBD24_ARATH; LOB domain-containing protein 24
TrEMBLV4K5H82e-85V4K5H8_EUTSA; Uncharacterized protein
STRINGXP_006395539.13e-86(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-77LOB domain-containing protein 24