PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005521m

Common Name

EUTSA_v10005521mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 283aa MW: 31167.9 Da PI: 4.8623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005521m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H++ H Thhalv10005521m 84 YTCQFCSKGFSTSQALGGHQNAH 106 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.39E-7	81	112	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.8E-6	82	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.092	84	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MASPVMSSSS SSTTQTEKLQ GLILAMEEES REKATESTNL RLGSPAEQEV MSERTSENPS 60 VRSGAVRTGK EIMTLYPSKS NKIYTCQFCS KGFSTSQALG GHQNAHKQER QWDKKRKEME 120 ETYPELAFLP PYLDKPHLLL GGYSQDALSN ENHLGITLEP LMKRSVCSSF PRGLGDMNMT 180 VVPRITPTRF FNGTTFTNGS SSSRGFELSP SNISNLPMIP MNVPPFHPPL TTNPSEENVL 240 VEENFISKIG KAKIEEIDDD DDDNQPKEGN AEGWGIDLSL SL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005521m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394933.2	0.0	uncharacterized protein LOC18012975
TrEMBL	V4KLW2	0.0	V4KLW2_EUTSA; Uncharacterized protein
STRING	XP_006394933.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	6e-95	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10005521m
Entrez Gene	18012975