PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005529m
Common NameEUTSA_v10005529mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 502aa    MW: 55655.3 Da    PI: 6.9687
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005529mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.62e-10237293155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Thhalv10005529m 237 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 293
                      57*******************4444.2344336655.7799999*************98 PP
2AP249.97.9e-16336387155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Thhalv10005529m 336 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 387
                      57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-8237293IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-13237302IPR016177DNA-binding domain
CDDcd000187.45E-18237303No hitNo description
PROSITE profilePS5103216.898238301IPR001471AP2/ERF domain
SMARTSM003809.3E-20238307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-11238301IPR001471AP2/ERF domain
PRINTSPR003674.1E-6239250IPR001471AP2/ERF domain
CDDcd000183.49E-11336395No hitNo description
SuperFamilySSF541719.15E-18336396IPR016177DNA-binding domain
PfamPF008473.3E-10336387IPR001471AP2/ERF domain
SMARTSM003807.9E-31337401IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18337395IPR001471AP2/ERF domain
PROSITE profilePS5103219.111337395IPR001471AP2/ERF domain
PRINTSPR003674.1E-6377397IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MANWLTFSLS PMEMLKSPDQ SHFVSYDASS APYLIDNLYV LKEEAQIETA SMADSTTLAT  60
FFDSQTHSPT QVPKLEDFFG DSSTSFVRYS DNQTERQNSS SLTRIYDPRH HTGEVTGYFA  120
DHHHDFKTIA CFQTNSGSEI VDDSASIGRA HLSKGGEFHV VDSSTTATAE LGFHGGCTNG  180
GALSLAVNNT DHPLSRNHGE RGKNSKKTIV SKKDTKAVES TDDSKKKIAE TFGQRTSIYR  240
GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA ARAYDLAALK YWGSAATTNF  300
QIASYSKELE EMNHMTKQEF IASLRRTSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN  360
KDLYLGTFAT EEEAAEAYDI AAIKFRGINA VTNFEMNRYD VEAVMKSSFP VGGGGAAKRH  420
KLSLESPPPS SSSDRNLQQH LPPSSSSELD PNSIPCGIPF ESSVLHHHQD LFQHYPAVSD  480
STTVDAPMNQ AEFFLWPNHS Y*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005529m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007164.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLV4KMZ10.0V4KMZ1_EUTSA; Uncharacterized protein
STRINGXP_006394021.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]