PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005551m
Common NameEUTSA_v10005551mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family EIL
Protein Properties Length: 533aa    MW: 60581.9 Da    PI: 4.4902
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005551mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3448.36.2e-137384221354
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiip 78 
                      ++lkkrmwkd++l+ +lk++kk+++ d+++     t     +            ++ e +rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+p
  Thhalv10005551m  38 DDLKKRMWKDRNLMSKLKQQKKDNYDDHSVLsspsT-----StsasssssttivRRAESSRRKKMARSQDSVLKYMMKIMEVCKARGFVYGIVP 126
                      79***********************99888544441.....22445567999*9**************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--H CS
             EIN3  79 ekgkpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgve 169
                      ekgkpv+g+sdsLr+WWke+v+fd+++p+a+s+y   + ++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++
  Thhalv10005551m 127 EKGKPVTGSSDSLRRWWKENVQFDQTAPNAVSDYltfADAQLISSNESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLA 217
                      ***********************************987788888877766...9**************************************** PP

                      HHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXX CS
             EIN3 170 pPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsa 262
                      pPWWP G+elwwge+g ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vlnqee+++++++ 
  Thhalv10005551m 218 PPWWPDGTELWWGEQGaAAFEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVLNQEEAILKRLKI 311
                      ****************9999999********************************************************************999 PP

                      X..XXXXXXXXXXXXXXXXXXXXXX...........XXXXXX.XXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXX...... CS
             EIN3 263 h..ssslrkqspkvtlsceqkedve...........gkkeskikhvqavktta..............gfpvvrkrkkkpsesakvsskevsrtc 329
                      +   ++  +q+p+ ++s +q+   +                  +   ++k+ +              ++++ +krk k++e++++ s+  + tc
  Thhalv10005551m 312 SddEEEGGNQEPERFISLDQESSLNdcllvandqevA------RLTGKDKRVDqesslnacfladqdQEQLGNKRKGKFVEQEATVSN--VNTC 397
                      9544466779999999999888777799965332220......333344443367778888888888*****************9999..79** PP

                      XXXXXXX.XXXXXXXXXXXXXXXXX CS
             EIN3 330 qssqfrgsetelifadknsisqney 354
                      q+s++++s+ +l+f dkn ++ +e+
  Thhalv10005551m 398 QNSSCPSSDASLGFFDKNLRTGHEM 422
                      *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.6E-12438303No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-67179310IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.75E-58181306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVEVQDLEPL SPIQDDEDDN YEDEEDEFDR LGEEISYDDL KKRMWKDRNL MSKLKQQKKD  60
NYDDHSVLSS PSTSTSASSS SSTTIVRRAE SSRRKKMARS QDSVLKYMMK IMEVCKARGF  120
VYGIVPEKGK PVTGSSDSLR RWWKENVQFD QTAPNAVSDY LTFADAQLIS SNESLDPNSY  180
IHMLHELQDT TLGSLLSALM QHCVPPQRRF PLEKGLAPPW WPDGTELWWG EQGAAAFEHG  240
PPPYRKPHDL RKAWKVSVLA AVIKHMSPNL ERVRRLARQS KCLQDKMMAK ETDTWSRVLN  300
QEEAILKRLK ISDDEEEGGN QEPERFISLD QESSLNDCLL VANDQEVARL TGKDKRVDQE  360
SSLNACFLAD QDQEQLGNKR KGKFVEQEAT VSNVNTCQNS SCPSSDASLG FFDKNLRTGH  420
EMECLYGTQE PINQSSGGSD GFVRSMTTSD DDYSASSRAE DTRGYHNQDG NWLDYFWFER  480
LQDLNQGFGD QAAAVDLNQL PDHSDSNQTM NEEDFSLWDM GCEDKDIYMS PD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-571793091130Protein ETHYLENE INSENSITIVE 3
4zds_B4e-571793091130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005551m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAB4938140.0AB493814.1 Arabidopsis thaliana At5g65100 mRNA for hypothetical protein, partial cds, clone: RAAt5g65100.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394078.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLV4KJG90.0V4KJG9_EUTSA; Uncharacterized protein
STRINGXP_006394078.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]