PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005559m
Common NameEUTSA_v10005559mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 286aa    MW: 32209.4 Da    PI: 9.9985
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005559mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.72.6e-2676175398
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifel 91 
                       +r+++eeD ++lLqG++df+++ g +p++d d+fy fvk++is+++s+sq+++K+r+LK+   + v+k     +  +++++fs++  qk+fel
  Thhalv10005559m  76 KKRVFTEEDSVALLQGFLDFNSTSG-DPFKDKDRFYGFVKERISVNASQSQVTDKVRKLKQNIANTVRKsiqkgKGGEDNIVFSRDVKQKVFEL 168
                      68******************99999.*************************************9999998666333455689************ PP

           DUF573  92 skkiWgs 98 
                      s+kiWgs
  Thhalv10005559m 169 SRKIWGS 175
                      *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-2177174IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAPKKEKKTA NPRLVSSKED EEEEESHSFK PSHTDAKDTH VEKSTNRKPK PEISHPKSST  60
AKRSLEKADH DEVRKKKRVF TEEDSVALLQ GFLDFNSTSG DPFKDKDRFY GFVKERISVN  120
ASQSQVTDKV RKLKQNIANT VRKSIQKGKG GEDNIVFSRD VKQKVFELSR KIWGSDGALP  180
SKSMKKLGGK QNIEEEEKPS TPLSSGVELV SYWKAEKNHS LALDEATALA YWNMAADGRK  240
KRALEEMLKR IKAKEMELCL ERSTLVTDTL NFICKEDIGS SSGKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005559m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007220.11e-132uncharacterized protein LOC112083427
TrEMBLV4KPF00.0V4KPF0_EUTSA; Uncharacterized protein
STRINGXP_006395888.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.19e-56DNA-binding storekeeper protein-related transcriptional regulator