PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005560m

Common Name

EUTSA_v10005560mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 279aa MW: 31756.3 Da PI: 8.9104

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005560m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.5e-26	146	195	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e l+ yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk+ s+ Thhalv10005560m 146 KSLSREALKPYFYMPITKAAKELNIGVTLLKKKCRELGIPRWPHRKLMSI 195 899********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.076	130	215	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-21	148	195	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
KTYNDFDGSS SPRTKPPLTT SKNVTIMYPL SIEMADESFL REGNLSSLLD QSVLSLDYYN 60 LSAGDHMFMA SVDLEAISTM SQDVLSGSWY ENTGNYNNQV EPIGDEISRT NGLVNPKMEV 120 ILHEDNNTMK ETGIQNRRYR EDGVIKSLSR EALKPYFYMP ITKAAKELNI GVTLLKKKCR 180 ELGIPRWPHR KLMSIQGIIT NLKDELGKTG GEMNRTKLRN ALEMLEMEKK MIEEDPHLKF 240 ADKTKRLRQA CFKANYKRRR LLSSVSTTSS LSWEQEPV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	260	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005560m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	9e-40	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	9e-40	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024006783.1	1e-167	protein RKD3
Swissprot	Q9FGD1	6e-95	RKD3_ARATH; Protein RKD3
TrEMBL	V4K031	0.0	V4K031_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006393899.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-80	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10005560m
Entrez Gene	18012707

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]