PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005566m
Common NameEUTSA_v10005566mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 253aa    MW: 28338.9 Da    PI: 5.8032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005566mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-2098148255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ta eAa+a+++a+ +l+g
  Thhalv10005566m  98 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTAVEAARAYDQAAFQLRG 148
                      8********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3297156IPR001471AP2/ERF domain
CDDcd000186.41E-3197156No hitNo description
PROSITE profilePS5103224.77798156IPR001471AP2/ERF domain
PfamPF008472.6E-1498148IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2498158IPR016177DNA-binding domain
SMARTSM003808.6E-3898162IPR001471AP2/ERF domain
PRINTSPR003671.6E-1099110IPR001471AP2/ERF domain
PRINTSPR003671.6E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MATEQEVLAI EFISQHLLRD FASMETKVSN FTLQEADPPL FTNQVHHFRS ETSPRTINNQ  60
NPKPNSTLNR RKPPLPNLSV PRTVSCTTKV REEEEEKHYR GVRRRPWGKY AAEIRDPNKK  120
GSRIWLGTYD TAVEAARAYD QAAFQLRGRK AILNFPLDVR AASESYFEEG VIGLGKRKRI  180
KISPAVEEEE KAEAVRVKVE EEESDTTEAE VEAVPLTPSS WMGVWDVGAG DGIFSVPPLT  240
PTSPDFSVIS VT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2897159466ATERF1
3gcc_A7e-2897159466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005566m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394488.10.0ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-121EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLV4KKN70.0V4KKN7_EUTSA; Uncharacterized protein
STRINGXP_006394488.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-116ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]