PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005568m
Common NameEUTSA_v10005568mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 287aa    MW: 31815.3 Da    PI: 6.6939
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005568mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.7e-3271124357
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                      ++r++eClkN+A+++GghavDGCgEfmp+ g egt++alkCaACgCHRnFHR+e 
  Thhalv10005568m  71 RFRFRECLKNQAVNIGGHAVDGCGEFMPA-GIEGTIDALKCAACGCHRNFHRKEL 124
                      789*************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-2872123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.4E-2973123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.41574123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2276124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.9E-18180254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-30183254IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26193249IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0010431Biological Processseed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEFEDNNNNN EEEDEMNLHE EEEDDAVYDS PSLPPPSRVL KASTESPETA GTTSTGGGGF  60
MVVHGGSGGS RFRFRECLKN QAVNIGGHAV DGCGEFMPAG IEGTIDALKC AACGCHRNFH  120
RKELPYFHHH APPQQPPPPP PGFYRLPAPV SYRPPPSQAP TLQLALPPPP QRERSEDRME  180
TSSAEAGGGG GIRKRFRTKF TAEQKERMLG LAERIGWRIQ RQDDELIQRF CQETGVPRQV  240
LKVWLHNNKH TLGKSSSPPL HHHHHHQNPT PPPPQSTSFH HEQDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-341922511675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00588DAPTransfer from AT5G65410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005568m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534950.0AK353495.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-46-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394037.10.0zinc-finger homeodomain protein 1
SwissprotQ9FKP81e-127ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBLE4MY980.0E4MY98_EUTHA; mRNA, clone: RTFL01-46-M17
TrEMBLV4KVC40.0V4KVC4_EUTSA; Uncharacterized protein
STRINGXP_006394037.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132371728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65410.11e-90homeobox protein 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]