PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005685m
Common NameEUTSA_v10005685mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 225aa    MW: 23757.4 Da    PI: 8.9121
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005685mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.81e-372686262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s
  Thhalv10005685m 26 QQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRS 86
                     57899***************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-36278IPR003851Zinc finger, Dof-type
PfamPF027015.1E-332884IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.773084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPSDFNESRR LTKIPHGGAV AIPADQQEQL PCPRCDSTNT KFCYYNNYNF SQPRHFCKSC  60
RRYWTHGGTL RDIPVGGVSR KSSKRSRTCS PVAASTAAGS RNFPLQATPI LFPQSSSGGA  120
ITAAKGSASS LYGGFTSLLN YSAAASRNGP GGCFNGPDGF GLGLCHGSYF DDVRFGQGIT  180
VWPFSTGATD ATTVAASHVT PIQATWQFEG PESKAGFVSG DYLA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00593DAPTransfer from AT5G66940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005685m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393893.11e-165dof zinc finger protein DOF5.8
SwissprotQ9FGD61e-124DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLV4KJ141e-164V4KJ14_EUTSA; Uncharacterized protein
STRINGXP_006393893.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.11e-119Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]