PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005779m

Common Name

EUTSA_v10005779mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 899aa MW: 99621 Da PI: 5.1651

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005779m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	568	618	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek +sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Thhalv10005779m 568 EKYVSLDVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 618 6889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	552	638	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-27	571	618	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-23	790	882	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.9E-23	793	876	No hit	No description
PROSITE profile	PS51745	20.972	796	879	IPR000270	PB1 domain
SMART	SM00666	2.6E-22	796	879	IPR000270	PB1 domain
Pfam	PF00564	7.7E-16	797	878	IPR000270	PB1 domain
CDD	cd06407	6.74E-33	797	878	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MENPSASREK GFSFPDIPSD EMDGWVKNLI SEEDMFSSSE LINSESFASW CNTPSATDIL 60 FTQYGLSTSQ STTPPFGALH VDPSPSFHGL QGSYVGEKRP LQEMSSPFYS LSDDAEYISG 120 KRSKSGHLTG AIDSSVPRPL SHSLDEKMLK ALSLFMEFSG EGILAQFWTP VKTGEQYMLS 180 TYDQAYLLDS RLSGYREVSR KFTFSTEASQ YSSPGLPGRV FISGVPEWTS NVMYYKAAEY 240 LRMKHALDNK VRGSIAIPVL EPSGTSCCAV LELVTCREKP NFDLEMDSVC RALQAVNLQT 300 STIPRRQYLS TNQKEALAEI RDVLRAVCHA HRLPLALAWI PCSYSKGAND ELVKVYEKKS 360 EESCLLCIEE TSCYVNDMEM EGFMNACLEH YLREGQGIVG KALISNKPSF SSDVKTFDIC 420 EYPLVQHARK FGLNAAVATK LRSTFTGDND YILEFFLPVS MKGSSEQQLL LDSLSGTMRR 480 LCRTLRTASD EVTEVGFLSG EVMSKLPQAT VSEGNFQTTL LDTDVNSTRS IFSNTSSDKT 540 NDIASSQGTL QQEISGARRS EKKKSSTEKY VSLDVLQQYF SGSLKDAAKS LGVCPTTLKR 600 ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLQ FDSVSGEFVA VGPFIQDFDT 660 QKSLPSHHDD AHVRIQGNMD EDGVIKLEEG VGTNQAGRGS LMEPCAWISK QSSLNYSDDF 720 DIGKRSEELN QDKDHCVRRC LSSLALADDG VNTRTVEPNQ SISNSMSDSS NGSGAVVEQD 780 WNQTRTHNNS CESGSTLTVK ATYRDDTIRF KFDPYVVGCC QLYKEVGKRF KLQDGAFQLK 840 YLDDEDEWVM LVTDSDLQEC LEILNVMRKH TVKFLVRDLP GTAIGSSAGS NVYLATCS*

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MENPSASREK GFSFPDIPSD EMDGWVKNLI SEEDMFSSSE LINSESFASW CNTPSATDIL  60
FTQYGLSTSQ STTPPFGALH VDPSPSFHGL QGSYVGEKRP LQEMSSPFYS LSDDAEYISG  120
KRSKSGHLTG AIDSSVPRPL SHSLDEKMLK ALSLFMEFSG EGILAQFWTP VKTGEQYMLS  180
TYDQAYLLDS RLSGYREVSR KFTFSTEASQ YSSPGLPGRV FISGVPEWTS NVMYYKAAEY  240
LRMKHALDNK VRGSIAIPVL EPSGTSCCAV LELVTCREKP NFDLEMDSVC RALQAVNLQT  300
STIPRRQYLS TNQKEALAEI RDVLRAVCHA HRLPLALAWI PCSYSKGAND ELVKVYEKKS  360
EESCLLCIEE TSCYVNDMEM EGFMNACLEH YLREGQGIVG KALISNKPSF SSDVKTFDIC  420
EYPLVQHARK FGLNAAVATK LRSTFTGDND YILEFFLPVS MKGSSEQQLL LDSLSGTMRR  480
LCRTLRTASD EVTEVGFLSG EVMSKLPQAT VSEGNFQTTL LDTDVNSTRS IFSNTSSDKT  540
NDIASSQGTL QQEISGARRS EKKKSSTEKY VSLDVLQQYF SGSLKDAAKS LGVCPTTLKR  600
ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLQ FDSVSGEFVA VGPFIQDFDT  660
QKSLPSHHDD AHVRIQGNMD EDGVIKLEEG VGTNQAGRGS LMEPCAWISK QSSLNYSDDF  720
DIGKRSEELN QDKDHCVRRC LSSLALADDG VNTRTVEPNQ SISNSMSDSS NGSGAVVEQD  780
WNQTRTHNNS CESGSTLTVK ATYRDDTIRF KFDPYVVGCC QLYKEVGKRF KLQDGAFQLK  840
YLDDEDEWVM LVTDSDLQEC LEILNVMRKH TVKFLVRDLP GTAIGSSAGS NVYLATCS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	557	563	RRSEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005779m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402676.1	0.0	protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	V4LK88	0.0	V4LK88_EUTSA; Uncharacterized protein
STRING	XP_006402676.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10005779m
Entrez Gene	18020234