PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006045m

Common Name

EUTSA_v10006045mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 368aa MW: 41723.7 Da PI: 6.6326

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006045m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.7e-14	187	237	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r +h ++Er+RR+++N+ ++ Lr+llP++ + ++ + a+i+ A++Y+k L Thhalv10006045m 187 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRGDQASIVGGAINYVKVL 237 699*************************...9***************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.67E-11	184	242	No hit	No description
SuperFamily	SSF47459	2.49E-17	185	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.764	186	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-11	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-13	188	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	192	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MERFQGHINP CFYDRQADAR SLDVQGFAEA QSFAFKKEEE ESLHDTVPFL QMLQSEEDPS 60 TFLSIKEPNF LSLLSLEPPK EPWELESYLS HEDPQFQSPV QSETSRICHN PISASSMEGA 120 ALSSQELPFS FSQTNMIIPS SSSSPRTANS RRKRKISHLL LSPEMTQEKR KRRKSKPTKN 180 IEDRENQRIN HIAVERNRRR QMNEHINSLR SLLPPSYIQR GDQASIVGGA INYVKVLEQI 240 IQSLESQKRS SGVENGVNDQ ATNNHHLSGI SSSDLWTGHE DQTKIEATVI QNHVSLKVQC 300 AKEQGHLLKG IISLEKLRLT VLHLNITSSS NLSVSYSFNL KMEDDCELES ADEITKAAHQ 360 IFDIRRF*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MERFQGHINP CFYDRQADAR SLDVQGFAEA QSFAFKKEEE ESLHDTVPFL QMLQSEEDPS  60
TFLSIKEPNF LSLLSLEPPK EPWELESYLS HEDPQFQSPV QSETSRICHN PISASSMEGA  120
ALSSQELPFS FSQTNMIIPS SSSSPRTANS RRKRKISHLL LSPEMTQEKR KRRKSKPTKN  180
IEDRENQRIN HIAVERNRRR QMNEHINSLR SLLPPSYIQR GDQASIVGGA INYVKVLEQI  240
IQSLESQKRS SGVENGVNDQ ATNNHHLSGI SSSDLWTGHE DQTKIEATVI QNHVSLKVQC  300
AKEQGHLLKG IISLEKLRLT VLHLNITSSS NLSVSYSFNL KMEDDCELES ADEITKAAHQ  360
IFDIRRF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	173	KRKISHLLLSPEMTQEKRKRRK
2	168	173	KRKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006045m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402426.1	0.0	transcription factor bHLH67
Swissprot	Q700E4	1e-173	BH067_ARATH; Transcription factor bHLH67
TrEMBL	V4LJF4	0.0	V4LJF4_EUTSA; Uncharacterized protein
STRING	XP_006402426.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-157	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10006045m
Entrez Gene	18019854

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]