PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006075m
Common NameEUTSA_v10006075mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family BBR-BPC
Protein Properties Length: 347aa    MW: 38595.7 Da    PI: 9.7457
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006075mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind403.72.3e-12313461301
        GAGA_bind   1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                      mdd g+re  r+k+       ++ +s+     +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++
  Thhalv10006075m   1 MDDGGHREngRHKAAQGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYR 89 
                      999999887888873331222222344.....5************************************************************* PP

        GAGA_bind  88 ensla.........salpvgvqvlsgtksidslqqlse........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
                      ens+a          a+p+g+q+++g+k++++ +++++        pql+++a+e+re+e+++ lp++  + +a e++k+k+++r k+pk++++
  Thhalv10006075m  90 ENSMAtaaaavanmGACPPGCQISRGVKHMHHPHMHHHqqqhqhhmPQLSENAYETREMETNDGLPTSPPTGSALESAKPKRGKRVKDPKATTK 183
                      ***99999**999889****************9998778999999************************************************* PP

        GAGA_bind 165 kkkkkksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233
                      ++ +k+++k+++kvkkes+d+                         sk+++k++++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+
  Thhalv10006075m 184 TAGNKRGPKNQRKVKKESEDDLtkimfvktshdygeeeaskhvligSKSDWKNQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSS 277
                      ******************984358********************************88************************************ PP

        GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                      CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Thhalv10006075m 278 CCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 346
                      *******************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.5E-1031346IPR010409GAGA-binding transcriptional activator
SMARTSM012265.7E-1751346IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAVAERDM  60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMATAAAAV ANMGACPPGC QISRGVKHMH  120
HPHMHHHQQQ HQHHMPQLSE NAYETREMET NDGLPTSPPT GSALESAKPK RGKRVKDPKA  180
TTKTAGNKRG PKNQRKVKKE SEDDLTKIMF VKTSHDYGEE EASKHVLIGS KSDWKNQEMV  240
GLNQVVYDET TMPPPVCSCT GVLRQCYKWG NGGWQSSCCT TTLSMYPLPA LPNKRHARVG  300
GRKMSGSAFN KLLSRLAAEG HHDLSNPVDL KDHWAKHGTN RYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006075m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402604.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024012767.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024012768.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLV4LNN20.0V4LNN2_EUTSA; Uncharacterized protein
STRINGXP_006402604.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6