PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006123m
Common NameEUTSA_v10006123mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 301aa    MW: 33875.9 Da    PI: 7.3658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006123mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.79.6e-3321126199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+kv tpsdv+k++rlv+pk++ae++        ++++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d  
  Thhalv10006123m  21 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnssTNDNNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDPG 114
                      89****************************999455568889************************************************9966 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l++ ++r+
  Thhalv10006123m 115 NKDKLYIDWRRR 126
                      77789****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-4211130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-3218129IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-2619115No hitNo description
PfamPF023625.1E-3021126IPR003340B3 DNA binding domain
SMARTSM010191.4E-2421127IPR003340B3 DNA binding domain
PROSITE profilePS5086314.56521127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNPEEEKPVE EASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NSSTNDNNKG  60
LLLNFEDRTG NSWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ RDPGNKDKLY  120
IDWRRRPKIP DHHHQFAGAM FPRIYSFPHP QMPTNYESHN LYHRFQRDLG IGYYVRSMER  180
SHPTAVIESV PVMMQRRSQV AAMASSRGEK RLRLFGVDME CGGGGGGGAS VNSTEEESSS  240
SGGSMPCGSV SMAGAGSLLQ LRLVTSDDES LVAMEAASVD EDHNLFTKKG KSSLSFDLDR  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-64161293116B3 domain-containing transcription factor NGA1
5os9_B3e-64161293116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006123m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386420.0AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBankAY0851970.0AY085197.1 Arabidopsis thaliana clone 13757 mRNA, complete sequence.
GenBankBT0258660.0BT025866.1 Arabidopsis thaliana At3g61970 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402424.10.0B3 domain-containing transcription factor NGA2
SwissprotQ9M2680.0NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLV4LN250.0V4LN25_EUTSA; Uncharacterized protein
STRINGXP_006402424.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-177B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]