PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006124m

Common Name

EUTSA_v10006121mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 300aa MW: 32461.7 Da PI: 9.991

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006124m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	9.6e-16	229	271	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ Thhalv10006124m 229 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 271 79***************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.4E-14	222	272	No hit	No description
SMART	SM00338	1.3E-12	225	297	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	227	272	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.55E-23	229	283	No hit	No description
SuperFamily	SSF57959	2.5E-10	229	274	No hit	No description
Pfam	PF00170	1.2E-12	229	272	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	232	247	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MQFPRLSQIA ITRQGSLYSL TLDEVQNHLG SSGKALGSMN LDELLKSVCS VEGNQPSSMT 60 VNGAAAAQEG LSRQGSLTLP RDLSKKTVDE VWKDIQQNKN GGNAHERRDK QPTLGEMTLE 120 DLLLKAGVVT ETIPGSNQDG PGGGPGCGPG GVSAGSGAGL GQNITQVGPW VQYHQLPSMP 180 QPQAFMPYPV SDMQAMVSQS SLMGGLSDTQ TPGRKRVASG EVVEKTVERR QKRMIKNRES 240 AARSRARKQA YTHELEIKVS RLEEENERLR RQKEVEKILP SAPPPDPKRQ LRRTSSAPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006124m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017162	0.0	AB017162.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 3 (AREB3), complete cds.
GenBank	AY062448	0.0	AY062448.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850; T8M16_180) mRNA, complete cds.
GenBank	AY081670	0.0	AY081670.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402943.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	0.0	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V4L275	0.0	V4L275_EUTSA; Uncharacterized protein
STRING	XP_006402943.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-173	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Thhalv10006124m
Entrez Gene	18020042

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]