PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006200m
Common NameEUTSA_v10006200mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 249aa    MW: 27921.7 Da    PI: 6.2616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006200mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-1958107255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Thhalv10006200m  58 PYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIRG 107
                      7*****888.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.6758115IPR001471AP2/ERF domain
SMARTSM003801.0E-3658121IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2159115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-3159116IPR001471AP2/ERF domain
PfamPF008473.1E-1359107IPR001471AP2/ERF domain
CDDcd000181.09E-3159117No hitNo description
PRINTSPR003671.2E-105970IPR001471AP2/ERF domain
PRINTSPR003671.2E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKQINIESS ASVITTSTAT TATSSSESWS SSKRSLVQDN EADGKRRKRS NDKCQTTPYR  60
GVRKRSWGKW VSEIREPKKK SRIWLGTYPT AEMAARAHDV AALAIRGNSG YLNFPELSGL  120
LPRPVSSSPK DIQIAAAKAA EATWREPVHD HEKAKRLMGT DELSHSELST AQSSASSSVV  180
FSSDTSETSS THDKESNEET VFDLPDLFTD GLMNQNDAFR YYDDTSTWHL YENDVWFRLE  240
EPFTWRNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16591151572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006200m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402577.10.0ethylene-responsive transcription factor ERF035
SwissprotQ9M2107e-93ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLV4L1890.0V4L189_EUTSA; Uncharacterized protein
STRINGXP_006402577.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.13e-79ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]