PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006221m
Common NameEUTSA_v10006221mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 231aa    MW: 27080.2 Da    PI: 4.991
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006221mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-183283556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +f++eq++ Le  Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Thhalv10006221m 32 KRFSEEQIKSLEVIFESETRLEPRKKVQLAQELGLQPRQVAIWFQNKRARWK 83
                     68*************************************************9 PP
2HD-ZIP_I/II1185.1e-3830121293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +++r+s+eq+k+LE  Fe+e++Lep++Kv+la+eLglqprqva+WFqn+RAR+k+kqlEk+y+ L+++y++l+++ e ++ke+++L +el++
  Thhalv10006221m  30 NQKRFSEEQIKSLEVIFESETRLEPRKKVQLAQELGLQPRQVAIWFQNKRARWKSKQLEKEYSILRANYNNLASQFEIMKKEKQALVSELQR 121
                      689*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-171387IPR009057Homeodomain-like
SMARTSM003892.8E-142289IPR001356Homeobox domain
PROSITE profilePS5007117.1032585IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-183192IPR009057Homeodomain-like
PfamPF000461.2E-153283IPR001356Homeobox domain
CDDcd000869.26E-143386No hitNo description
PRINTSPR000315.9E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000315.9E-66581IPR000047Helix-turn-helix motif
PfamPF021832.3E-1585127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEERGLFNCR FSEINSGMTM NKKKMKKSNN QKRFSEEQIK SLEVIFESET RLEPRKKVQL  60
AQELGLQPRQ VAIWFQNKRA RWKSKQLEKE YSILRANYNN LASQFEIMKK EKQALVSELQ  120
RLNEEMQTSK EERHHPEYCG DQGVALSSST ESDNGKCELE VRLNQGVVMC NDDIKTEYFG  180
FEEETNHELM NIVEQADDSC LTSSDDWRGF NSDSLLNQSS SNYPWWDFWS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006221m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0006000.0KT000600.1 Brassica napus note zy72360 line homeobox-leucine zipper protein (ATHB-12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402431.11e-171homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2761e-117ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLV4LJG01e-169V4LJG0_EUTSA; Uncharacterized protein
STRINGXP_006402431.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-115homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]