PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006410m
Common NameEUTSA_v10006410mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 231aa    MW: 25972.5 Da    PI: 7.9633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006410mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-105298354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+ErrRR+riNs +++Lr ll         K +Ka+ L k+v+ +k+L
  Thhalv10006410m 52 RNHKEAERRRRERINSHLNNLRNLLSCK-----SKTDKATLLAKVVQRVKEL 98
                     58***********************997.....6************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3164998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-85298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1252106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1152114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.11E-6131210No hitNo description
Gene3DG3DSA:3.30.70.2606.0E-7132210No hitNo description
PROSITE profilePS516718.918132209IPR002912ACT domain
CDDcd048731.14E-5133199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0010200Biological Processresponse to chitin
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQPQISDQIL YSFLTGGFSA SSSTTTTTTS PFYPFAIEED TISQDRALAA LRNHKEAERR  60
RRERINSHLN NLRNLLSCKS KTDKATLLAK VVQRVKELKQ QTLEISNETL PSETDEINVE  120
DCSNDDGRII FKISFCCEDR PELLQDVVKI LKSLQMETVY AEITTIGGRT RNDLVVVADI  180
EQHGVESVKY LQNALKSLLE RSSQSVVMRR GGGGVERSKR RRGVDHIIMV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006410m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402950.11e-169putative transcription factor bHLH107
SwissprotQ9LET01e-107BH107_ARATH; Putative transcription factor bHLH107
TrEMBLV4LWX31e-168V4LWX3_EUTSA; Uncharacterized protein
STRINGXP_006402950.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]