PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006452m
Common NameEUTSA_v10006452mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARR-B
Protein Properties Length: 433aa    MW: 48803.4 Da    PI: 5.1842
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006452mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.93e-25212270155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                      kpr+ WtpeLH++F +ave++G  ekA+Pk+il++    m+v+gLt+++v+SHLQkYRl
  Thhalv10006452m 212 KPRMTWTPELHDKFQKAVEKIGNGEKAVPKQILKCmleeMNVEGLTRNNVASHLQKYRL 270
                      79******************************976333379*****************8 PP
2Response_reg53.11.8e-18381421105
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      v++vd +    +l+++++++  y +v+ +++g++a++ l +++  +Dl++ D    +++Gle+l +i +e  +lp+++ +   e+e++    k 
  Thhalv10006452m  38 VVLVDSDSESSSLMKNLMTQFSY-QVTNFTNGDDAIAFLMKSKdeIDLVIWDFHVTEINGLEALNTIGKEM-DLPVVITSHDHEKETVMTSTKN 129
                      7899*******************.***************777779**********************6644.7*******9999********** PP

                      TESEEEESS--HH CS
     Response_reg  93 GakdflsKpfdpe 105
                      Ga dfl+Kp+++e
  Thhalv10006452m 130 GACDFLVKPVSKE 142
                      *********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.11E-2235159IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-2535159No hitNo description
SMARTSM004487.8E-1236147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.51437152IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1538142IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.74E-1240147No hitNo description
SuperFamilySSF466897.35E-16210274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-25210273IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-23212270IPR006447Myb domain, plants
PfamPF002495.1E-9214269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSVSSSTPKE DSHDLREEPC DGEIDDNDKE FPTTSIRVVL VDSDSESSSL MKNLMTQFSY  60
QVTNFTNGDD AIAFLMKSKD EIDLVIWDFH VTEINGLEAL NTIGKEMDLP VVITSHDHEK  120
ETVMTSTKNG ACDFLVKPVS KEVVEVLWQH VYRKRMSKSG LDSVEKDSEK DGGLGQHSNN  180
LDHSNEVCSK NVQDSEEQNT GDKKGGRPLS KKPRMTWTPE LHDKFQKAVE KIGNGEKAVP  240
KQILKCMLEE MNVEGLTRNN VASHLQKYRL AEKKPCVPQE STRVDSGWHY NAGPNPTSLI  300
TASQPLLNSS INLHTRVPSS FLTNDQAAEN APIQYPSINY LTMNNSLLMT NPCIDSFYHP  360
QHQQQQQQQQ QQQQQQHYHS SLQLPSVIPK QDPAQVLSTM ENSGLLYPPN LPYDFNEYFP  420
PGHNNFDPVN RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14211274462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006452m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402357.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ81e-122ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLV4L0M00.0V4L0M0_EUTSA; Uncharacterized protein
STRINGXP_006402357.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.12e-99response regulator 20