PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006506m
Common NameEUTSA_v10006506mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 635aa    MW: 69432.4 Da    PI: 4.9571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006506mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.52.8e-9727663315374
             GRAS  15 gdlelaqalLarlselaspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                      ++  laq +Larl+++ +++ +       p++R+a y+teAL++ l++         pps +s+++ + ++aa+++fse+sP+l+f ++ta q+
  Thhalv10006506m 276 SNPVLAQGILARLNHNLNNNNNtnnnpkpPFHRAALYITEALQSLLQD--------SPPSLSSPQTLILRIAAYRAFSETSPFLQFVNFTASQT 361
                      45569**********955555436789999*****************9........6777778889**************************** PP

             GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                      Ile++eg +r+Hi+Dfdi++G+QW +L+q+La +R+  +++psl+iT+++sp+++ ++ el+ t+e+L++fA+e++v+fe+++l +++l + + 
  Thhalv10006506m 362 ILESLEGFDRIHIVDFDIGYGGQWSSLIQELAgKRNrsSSAPSLKITAFASPSTVsDEFELRFTEENLRNFAAETEVSFEIELLNMETLLNPTC 455
                      ********************************85556699*************9999***************************9998888888 PP

             GRAS 192 eeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpres.e 280
                      + L++ +   +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++sl+a+  +++ e
  Thhalv10006506m 456 WPLSLLRssdKEAIAVNLPISSVVSG--------YLPLILRFLKQISPNVVVCSDRSCDRnNDAPFPNGVIHALQYYTSLLESLDASGNQNDeE 541
                      8776655566**********655554........5677**********************99**********************8876555558 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSa 372
                      +++++Er++++++i+ ++ ++ ++    +e+   Wr  ++++GF+pv+ls++a++qa++ll++ + +g+++e++  s slvl+W++++Lv+vSa
  Thhalv10006506m 542 AATSIERFCVQPSIKRLLENRYRW----MERSPPWRGLFGQCGFSPVTLSQSAETQAEYLLQRNPLRGFHLEKRhsSSSLVLCWQRKELVAVSA 631
                      999*********************....9*******************************************7655899*************** PP

             GRAS 373 Wr 374
                      W+
  Thhalv10006506m 632 WK 633
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.611231611IPR005202Transcription factor GRAS
PfamPF035149.8E-95276633IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MPLPFEGFQG KGVLGFLDSS PEYKIWTNRE KIHGRREDLC YVVGVNNGGF PEPTSVLDSI  60
RSPSPFVSSS TTTLSSSHGG PSGGAAGSFS GTDGKCDQLG FEDLDGVLSG SPGQEQSILR  120
LIMAGDVVDP GSEFVGFNPA SGSDPVIDNP NPLFGYGFPF HEPTLPGEEE KFQITTNPET  180
PIHPNPGFFS VGSSPPAKRL NSSQPGSLLS DSHHHHHQWV FPFSDPGHGS HDPFLTPPKV  240
AGTEDEDEHA QSSTVIIDQL FNATAELIGT KNGGDSNPVL AQGILARLNH NLNNNNNTNN  300
NPKPPFHRAA LYITEALQSL LQDSPPSLSS PQTLILRIAA YRAFSETSPF LQFVNFTASQ  360
TILESLEGFD RIHIVDFDIG YGGQWSSLIQ ELAGKRNRSS SAPSLKITAF ASPSTVSDEF  420
ELRFTEENLR NFAAETEVSF EIELLNMETL LNPTCWPLSL LRSSDKEAIA VNLPISSVVS  480
GYLPLILRFL KQISPNVVVC SDRSCDRNND APFPNGVIHA LQYYTSLLES LDASGNQNDE  540
EAATSIERFC VQPSIKRLLE NRYRWMERSP PWRGLFGQCG FSPVTLSQSA ETQAEYLLQR  600
NPLRGFHLEK RHSSSSLVLC WQRKELVAVS AWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-292676338375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006506m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402563.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLV4NDF30.0V4NDF3_EUTSA; Uncharacterized protein
STRINGXP_006402563.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]