PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006508m
Common NameEUTSA_v10006508mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 321aa    MW: 36215.1 Da    PI: 6.5767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006508mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC  C ksF +   L  H+r+H
  Thhalv10006508m  4 YKCRFCLKSFVNGRALGGHMRSH 26
                     9*********************9 PP
2zf-C2H215.93.7e-05202224123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ Cgk+F++   L  H  +H
  Thhalv10006508m 202 YTCETCGKVFKSYQALGGHRASH 224
                      9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-9326No hitNo description
PROSITE profilePS5015710.076426IPR007087Zinc finger, C2H2
PfamPF139121.9E-6428IPR007087Zinc finger, C2H2
SMARTSM003550.024426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-9197224No hitNo description
PfamPF139124.9E-11202226IPR007087Zinc finger, C2H2
SMARTSM003550.011202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
PfamPF139125.6E-12255277IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058255277IPR007087Zinc finger, C2H2
SMARTSM003550.23255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESYKCRFCL KSFVNGRALG GHMRSHMPSL HKFSIEEEEE KEEDERPSQL SYETESDVSS  60
SSAEEEEEEE GKINDDSKFA FTGSVLLEDG ESEAESSRNN LNLTRKRSKR TRKLDSFATK  120
KVKTSQLGYK AEPGPESEPP HSSASDTTTE EDLAFCLMML SRDKWKKNKT SKELVLEEID  180
TEESEGYNKS SKINRTTTKG RYTCETCGKV FKSYQALGGH RASHKKNRVS NKTEQRSETE  240
YNNVVIAVTA EKRIHECPIC LRVFASGQAL GGHKRSHGIG NLSVNYHHHQ GHRIESVKQR  300
LIDLNLPAPT EEDEVSVVFQ *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006508m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402568.10.0zinc finger protein ZAT9
SwissprotQ9M2021e-159ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLV4NDF70.0V4NDF7_EUTSA; Uncharacterized protein
STRINGXP_006402568.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-132C2H2-like zinc finger protein