PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007139m
Common NameEUTSA_v10007139mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 598aa    MW: 66645.8 Da    PI: 6.8577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007139mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13440485454
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Thhalv10007139m 440 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 485
                      799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-5148236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-14439490No hitNo description
SuperFamilySSF474599.42E-19439506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10440485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-18440499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MNIGGVAWNE DDKAIVASLL GKRALDYLLS NSVPNANLLM TVGSDENLQN KLSDLVERPN  60
ASNFSWNYAI FWQISRSKAG DLVLCWGDGS CREPKEGEKS EIVRILSMGR EEETHQTMRK  120
RVLQKLHALF GGLEEDNCAL GLDRVTDTEM FLLASMYFSF PRGEGGPGKC FDSGKPVWLP  180
DVVNSGSDYC VRSFLAKSAG IQTIVLVPTD IGVVELGSTR SLPESQESML SIRSLFSSYL  240
PPPVRVVTPA ALPVVVADKN DDNRTVNSSK IFGKDLQNSG FLRHHQQQPQ QQQQQHRQFR  300
EKLTVRKMDD RVPKRLDTYP NNGNRYVFSN PSTNNNNNNS TLLSPTWVQP EMYTRANSVK  360
EVPNTEDFKF LPLQQSSQRL LPPAQMQIDF SGASSRAPEN NSDGEGGAEW ADVVGGDESG  420
NNKPRKRGRR PANGRAEALN HVEAERQRRE KLNQRFYALR SVVPNISKMD KASLLGDAVS  480
YINELHAKLK VMEAERERLG YSSNPPISLE PEINVQTSGE DVTVRVNCPL DSHPASRIFH  540
AFEEAKVEVI NSNMEFSQDT VLHAFVIRSE ELTKEKLISA FSREQSSSVQ SRTSSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-26434496264Transcription factor MYC2
5gnj_B5e-26434496264Transcription factor MYC2
5gnj_E5e-26434496264Transcription factor MYC2
5gnj_F5e-26434496264Transcription factor MYC2
5gnj_G5e-26434496264Transcription factor MYC2
5gnj_I5e-26434496264Transcription factor MYC2
5gnj_M5e-26434496264Transcription factor MYC2
5gnj_N5e-26434496264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007139m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533310.0AK353331.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-P08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418406.10.0transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLE4MXT40.0E4MXT4_EUTHA; mRNA, clone: RTFL01-24-P08
TrEMBLV4KZG70.0V4KZG7_EUTSA; Uncharacterized protein
STRINGXP_006418406.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]