PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007142m
Common NameEUTSA_v10007142mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 596aa    MW: 66891.5 Da    PI: 4.9951
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007142mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4401.7e-1342265953374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L++cA+a+s+g+ e+a +++++l++ +s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+e+laa+++++ev+P++kf++l
  Thhalv10007142m 226 QILISCARALSEGKSEEALSMVNELRQVVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGFL 316
                      78*****************************************************************9...9********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN aI ea+ gee+vHi+Dfdi+qG Q+++L+q+ a+ p++ p+lR+Tg+++pes+  s   l+ +g rL++fAe  gv+f+f++ v ++++ 
  Thhalv10007142m 317 AANGAIIEAIRGEEEVHIVDFDINQGNQYMTLIQTVAELPGKRPRLRLTGIDDPESVqrSIGGLRIIGLRLEQFAEDHGVSFKFKA-VPSKTSI 409
                      *******************************************************9988899************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      +++++L ++ gE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+e+ eyysa+f+sl+++lpres+er
  Thhalv10007142m 410 VSPSTLGCRAGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFSRFIESYEYYSAVFESLDMTLPRESQER 503
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s+++ ++++ l+++ + + y+++ee g+l ++W++++L+++SaWr
  Thhalv10007142m 504 MNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPRPMSSRVSSNIQNLIKQQYCNRYKLKEEMGELHFCWEEKSLIVASAWR 595
                      ***************************************************************777*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.556198575IPR005202Transcription factor GRAS
PfamPF035145.9E-132226595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVEQAVVREH IKARVMSLVR SAEPSAAAYR NPKLYSLNEN GYNSGVTSVE IFDPDRSKNP  60
CLTDDSYPSQ SYEKYFLYSP SDELVQHPVG SGASVSSFGS LDSYPYQSRP VLGCSMEFQL  120
PFDSTSTSST RLCGGYQGEI QTPSMDVVGE FDDERMRSKI QELERALLGD EDDKMVGIDN  180
LMEIDNDWSY HNESKQHHDS PKESSSADSN SHVSSKEVVS QTTPKQILIS CARALSEGKS  240
EEALSMVNEL RQVVSIQGDP SQRIAAYMVE GLAARMAASG KFLYRALKCK EPPSDERLAA  300
MQVLFEVCPC FKFGFLAANG AIIEAIRGEE EVHIVDFDIN QGNQYMTLIQ TVAELPGKRP  360
RLRLTGIDDP ESVQRSIGGL RIIGLRLEQF AEDHGVSFKF KAVPSKTSIV SPSTLGCRAG  420
ETLIVNFAFQ LHHMPDESVT TVNQRDELLH MVKSLNPKLV TVVEQDVNTN TSPFFSRFIE  480
SYEYYSAVFE SLDMTLPRES QERMNVERQC LARDIVNIVA CEGEERIERY EVAGKWRARM  540
MMAGFSPRPM SSRVSSNIQN LIKQQYCNRY KLKEEMGELH FCWEEKSLIV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5623159425377Protein SCARECROW
5b3h_D2e-5623159425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007142m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525710.0AK352571.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416300.10.0scarecrow-like protein 1
RefseqXP_024008197.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLV4L4H20.0V4L4H2_EUTSA; Uncharacterized protein
STRINGXP_006416300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]