PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007163m
Common NameEUTSA_v10007000mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 589aa    MW: 64622.7 Da    PI: 9.5602
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007163mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.33.3e-3164148187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laL+++r++m++++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++ke++++r++++   +++f+qlea
  Thhalv10007163m  64 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLMELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 148
                      8*********************************************************************86555..5******985 PP
2trihelix105.34.2e-33433517186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k e+laLi++r+ me r++++  k+ lWee+s+ m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
  Thhalv10007163m 433 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISASMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 517
                      8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.94657121IPR017877Myb-like domain
SMARTSM007170.1161123IPR001005SANT/Myb domain
CDDcd122032.40E-2563128No hitNo description
PfamPF138372.9E-2163149No hitNo description
PROSITE profilePS500906.876426490IPR017877Myb-like domain
SMARTSM007170.0069430492IPR001005SANT/Myb domain
PfamPF138373.5E-22432517No hitNo description
CDDcd122038.50E-29433497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0042631Biological Processcellular response to water deprivation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MEQGGGGEVG GGGGGNEVVE EASPISSRPP ANLEELMRFS AAADDGGGLG GGGGGSSSSS  60
SGNRWPREET LALLRIRSDM DSTFRDATLK APLWEHVSRK LMELGYKRSA KKCKEKFENV  120
QKYYKRTKET RGGRHDGKAY KFFSQLEALN TTPPPLPPPP PPSSSLDVAP LSVANPIQPQ  180
SQFPVFPLPQ TQPQPSQPHL THTVSFTTPP PPLPPPPMGP TFPGVTFSSH SSSTASGMGS  240
DDDDDMDLDE AGPSSRKRKR GNRGGGEGGK MMELFEGLVR QVMEKQAAMQ RSFLDALEKR  300
EQERLQREEA WKRQEMSRLA REHEVMSQER AASASRDAAI ISLIQKITGH TIQLPPSLSS  360
SQPPQPPHQP PPPAAKRVEP PQTTTTQSQS QPIMAIPQQQ ILPPPHPPAP PPAPHQQQEM  420
IMSPEQSSPS SSRWPKAEIL ALINLRSGME PRYQDNVPKG LLWEEISASM KRMGYNRNAK  480
RCKEKWENIN KYYKKVKESN KKRPQDAKTC PYFHRLDLLY RNKVLGNGSG SSTSGLPQEQ  540
TSTVQKQSPV SKPPQEGVVN IHQPHGSASS EEEERIEESL QGTEKKTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00177DAPTransfer from AT1G33240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007163m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400851e-162AY140085.1 Arabidopsis thaliana DNA-binding factor, putative (At1g33240) mRNA, complete cds.
GenBankBT0088241e-162BT008824.1 Arabidopsis thaliana At1g33240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415118.10.0trihelix transcription factor GTL1 isoform X2
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLV4MPA00.0V4MPA0_EUTSA; Uncharacterized protein
STRINGXP_006415119.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-69GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]