PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007196m
Common NameEUTSA_v10007196mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 578aa    MW: 64289.6 Da    PI: 4.6609
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007196mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.27.1e-49181442128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +pGfrFhPtdeelvv+yLk+kv g+kl++ ++i  vd+ykv+P++Lp  + +k+++++w++F++r++ky++  r++r t++gyWkatgkd+ ++
  Thhalv10007196m  18 APGFRFHPTDEELVVYYLKRKVCGRKLRI-NAIGVVDVYKVDPSELPglSVLKSGDRQWFYFTPRSRKYPNAARSSRGTATGYWKATGKDRVIV 110
                      59***************************.89***************644888899************************************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ vglkktLvfy+grap+ge+tdWvmhey++
  Thhalv10007196m 111 Y-NSRPVGLKKTLVFYRGRAPNGERTDWVMHEYTM 144
                      9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.72517167IPR003441NAC domain
SuperFamilySSF1019417.85E-5617167IPR003441NAC domain
PfamPF023653.0E-2519143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MANSSSPDSC LRGGKFNAPG FRFHPTDEEL VVYYLKRKVC GRKLRINAIG VVDVYKVDPS  60
ELPGLSVLKS GDRQWFYFTP RSRKYPNAAR SSRGTATGYW KATGKDRVIV YNSRPVGLKK  120
TLVFYRGRAP NGERTDWVMH EYTMDEEELG RCKNVKDYYA LYKLYKKSGA GPKNGEEYGA  180
PFQEEEWVDD DDSEDADNVV AVPDDHVVRY ENNCRVDDGM FCNPVSVQLD DLEKLLNEIP  240
DAPGVAPREM SDLSGVLQGN SEGEIQSTLL NNFPGEFLAP REVGKFSPNC QPYNRPLSFQ  300
PHLRSENSAF NASGMAPLVF EKEDYIEMDD LLIPELRAST TEESSQFLNH GELGNVNEFD  360
QLFHDISMSL DAEPVFQGTS TDLSSLSDHA SNTSDQRQQF LYQEVQDQSP ENQLNNFIDD  420
PSTSLNQFTD DMWFHDAQAD LFDQPQSSSL AFASPSPGVI PGSTNPTMNV NAQDQEGQNG  480
VGKTSQFSSA LWAFMESIPS TPASACEGPL NRTFVRMSSF SRIRFNGTSV TTSKVTKAKK  540
RMGNRGFLLL SIMGALCAIF WVFIIATVGV LGRPILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-441914417140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007196m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415017.10.0NAC domain-containing protein 16
RefseqXP_024008436.10.0NAC domain-containing protein 16
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLV4K6Y90.0V4K6Y9_EUTSA; Uncharacterized protein
STRINGXP_006415017.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]