PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007594m
Common NameEUTSA_v10007594mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 457aa    MW: 50134.5 Da    PI: 6.6391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007594mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000313373751255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  Thhalv10007594m 337 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYINFLQ 375
                      7788899*********998.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.471325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-10335388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-5335379No hitNo description
Gene3DG3DSA:4.10.280.104.2E-8339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDSANMHQLR QDQLQLVGSS SSSSSLDNNS DPSCYVASSA HQWNPGGISL NSERLSQKYN  60
IEMLNRRDHN NSNNNNTSEC MSLSNIHNHS LIQQQDFPLQ WPHDQSSYHH HEGLHKIKEE  120
LSSSTTSDHQ EGLPKFTDML NSPVITNYLK INEHKDYTEK LLLNTISSGF PINGDYTSSL  180
PSSSSSSSSS LPASQSHRGS FSQIYPSVNI SSLSESRGMS MDMSNIPRPF DMNMQVLDGR  240
LLEGNVLVPP LNSQEISNFG MSRGSFSPFG LPFHHHLQQT LHHPSSSPTH QTEMFSNEPQ  300
ASEGKRQNFL MATKAGENAS KKPRVESRSS CPPFKVRKEK LGDRIAALQQ LVSPFGKTDT  360
ASVLMEAIGY INFLQNQIET LSVPYMRASR NRPGKASQLG SLPQEGDEEE TRDLRSRGLC  420
LVPLSCMTYV TGDGGDGGCG VGNGFWPTPP GFGGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007594m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415743.10.0transcription factor bHLH110 isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLV4MQV90.0V4MQV9_EUTSA; Uncharacterized protein
STRINGXP_006415743.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]