PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10007669m

Common Name

EUTSA_v10007669mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 438aa MW: 49122 Da PI: 6.9555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10007669m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	328	361	15	53
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ Thhalv10007669m 328 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 361 7899999999999998.....8***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.994	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-9	327	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.07E-4	327	367	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.8E-7	328	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MIREECTPSS SWWEDVQHHH NDHANSISST SFYHKNSNSY ANASCEGDNL SISTVNASNR 60 FDLTAESSNH HSLSAPDQPA SSSNELLRDH AVSSHNHLWN LAFMPGRSLG DQMMDQHHHH 120 NHITTSSRNN SSSTSELPFE PVCDNASGNG WIYDTNQGRY DQISERRLSS KQTDLVGKHW 180 SLAPPNNPDM NHNNLHHHFD QTTNDDVSMF RQALEVKNEE DLCYNNGLSG GASLFHDAIE 240 SSRSFLDIRL SRPLTDINPS FKPCFKALNL SEFNKKEHQT TSLAAVRLGT TNAGKKKRCD 300 EVSDEVSKKA KCGGGSTLSP EKELPKAKLR DKITTLQQIV SPFGKTDTAS VLQEAITYIN 360 FYQEQVKLLS TPYMKNSSIK DPWGGWDRED HNKRGQKHLD LKSRGLCLVP ISCTPIAYRD 420 NSATDYWSPS YRGSLYR*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MIREECTPSS SWWEDVQHHH NDHANSISST SFYHKNSNSY ANASCEGDNL SISTVNASNR  60
FDLTAESSNH HSLSAPDQPA SSSNELLRDH AVSSHNHLWN LAFMPGRSLG DQMMDQHHHH  120
NHITTSSRNN SSSTSELPFE PVCDNASGNG WIYDTNQGRY DQISERRLSS KQTDLVGKHW  180
SLAPPNNPDM NHNNLHHHFD QTTNDDVSMF RQALEVKNEE DLCYNNGLSG GASLFHDAIE  240
SSRSFLDIRL SRPLTDINPS FKPCFKALNL SEFNKKEHQT TSLAAVRLGT TNAGKKKRCD  300
EVSDEVSKKA KCGGGSTLSP EKELPKAKLR DKITTLQQIV SPFGKTDTAS VLQEAITYIN  360
FYQEQVKLLS TPYMKNSSIK DPWGGWDRED HNKRGQKHLD LKSRGLCLVP ISCTPIAYRD  420
NSATDYWSPS YRGSLYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10007669m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493488	0.0	AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415377.1	0.0	transcription factor bHLH111 isoform X1
Swissprot	Q9FYJ6	0.0	BH111_ARATH; Transcription factor bHLH111
TrEMBL	V4K7X9	0.0	V4K7X9_EUTSA; Uncharacterized protein
STRING	XP_006415377.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10007669m
Entrez Gene	18991970