PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007862m
Common NameEUTSA_v10007862mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 391aa    MW: 42983.1 Da    PI: 8.7472
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007862mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.71.5e-1819108273
         trihelix   2 WtkqevlaLiearr................emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                      Wt +e+++Liea++                em+      +         ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r
  Thhalv10007862m  19 WTLNETMVLIEAKKmdderrmrrsiglpppEMQ------QdsrsssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRR 106
                      **************6666666666666666333......0333333338899****************************************98 PP

         trihelix  72 ts 73 
                       +
  Thhalv10007862m 107 VE 108
                      43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.761193IPR017877Myb-like domain
PfamPF138373.3E-1318108No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPEM QQDSRSSSNK  60
PAELRWKWIE DYCWRKGCMR SQNQCNDKWD NLMRDYKKVR EYERRRVESS FASSSSSSSA  120
AETGSYWSME KSERKERNLP SNMLPQTYQA LYEVVESKTL PSSTAATAVT AAVAAAAAAI  180
GSGNGSSGGL EIQKAIQQQQ QQGLGSVVPK HQMTIQPPPV ILPLQPPPSQ PPQPLPRPLL  240
LPPPPPPSFH AQPILPTKDS SSDSDTSEYS DTSPAKRRRT IPTEPAGPSG GGGVNAESEE  300
AVAAALSRSA SVIANAIKDS EERQDRRHKE VMSLQERRLK IEESNVEINK EGMNGLVEAI  360
NKLASSIFAL ASSSTTTTSR HNNQHQEGPQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007862m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534730.0AK353473.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-44-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008957.10.0trihelix transcription factor ASR3 isoform X1
RefseqXP_024008958.10.0trihelix transcription factor ASR3 isoform X2
TrEMBLV4L1S60.0V4L1S6_EUTSA; Uncharacterized protein
STRINGXP_006415345.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-118Trihelix family protein