PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007879m
Common NameEUTSA_v10007879mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 390aa    MW: 41060.1 Da    PI: 6.4305
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007879mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.27.4e-23292354163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +e+
  Thhalv10007879m 292 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLNGENTSLRAEINKLKSQYEELLAEN 354
                      89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.5E-261110IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-38150269No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-18284350No hitNo description
PfamPF001704.1E-21292354IPR004827Basic-leucine zipper domain
SMARTSM003385.0E-21292356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.817294357IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-12295351No hitNo description
CDDcd147029.50E-23297347No hitNo description
PROSITE patternPS000360299314IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGSSEMEKSG KENEPKTPPH SSSSAPAPAP APVTSQEPSS SAAVSAGMAT PDWSGFQAYS  60
PMPPHGYVAS SPQPHPYMWG VQHMMPPYGT PPHPYVAMYP PGGMYAHPSI APGSYPYSPY  120
AMPSPNGMAE ATGNTGSGID GEAKQSEVKE KLPIKRSKGS LGSLNMIIGK NSETGKSSGA  180
SANGACSKSA ESASDGSSEG SDANSQNDSG SRHNGKDGET ASDSAHGPPR NGSNLPVNQI  240
VPIMPVSATG VPGPPTNLNI GMDYWSSHGN VSSAVPGVVV DGSQSQPWLQ DERELKRQRR  300
KQSNRESARR SRLRKQAECD ELAQRADVLN GENTSLRAEI NKLKSQYEEL LAENSSLKNR  360
FSSAPSLLEG VNLDKNEQET ETSKRQDVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314RRSRLRK
2308315RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007879m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535050.0AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415248.10.0bZIP transcription factor 68
RefseqXP_024008293.10.0bZIP transcription factor 68
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLV4MPP30.0V4MPP3_EUTSA; Uncharacterized protein
STRINGXP_006415248.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]