PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007908m
Common NameEUTSA_v10007908mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 384aa    MW: 40422.6 Da    PI: 7.9467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007908mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-0791114125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      +kt+lC+ f+  GtC+y  +C+FaH
  Thhalv10007908m  91 FKTKLCCKFRV-GTCPYITNCNFAH 114
                      69*********.************* PP
2zf-CCCH42.61e-13260285126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Thhalv10007908m 260 WKTRICNKWEITGYCPFGAKCHFAHG 285
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-788121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-1388123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.93990117IPR000571Zinc finger, CCCH-type
SMARTSM003560.008290116IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-591114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.47170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244170198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-8171197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-17254289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-10255290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178259287IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9259286IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11260285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSHRRDSGGD VVHVIPTNNP PPENWFPNLG DSAVWATEDD YNRVWAVNPD NSSGDNGPPN  60
KKSRGSPSPS SATTSASAAS NRTKAIGKMF FKTKLCCKFR VGTCPYITNC NFAHTVEELR  120
RPPPNWQEIV AAHEEERSGT GTPTTVAAAE PREEFQIPSL VSSTAESGRS FKGRHCKKFY  180
TEEGCPYGES CTFLHDEASR NRESVAISLG PGGYGGGVGG GIGGGGGSGG GSNVVVLGGG  240
GNGSGNGNGS GIHVVKPSNW KTRICNKWEI TGYCPFGAKC HFAHGAAELH RFGGGLVEEE  300
GKDGVSPNPD VKQTGPSTKV QSETTTLVSP GVSHHADAVY NSGVALQRAS SAVTQKPGIR  360
THQKWKGPAK ISRIYGDWID DIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007908m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415209.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLV4KU700.0V4KU70_EUTSA; Uncharacterized protein
STRINGXP_006415209.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein