PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007936m
Common NameEUTSA_v10007936mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 380aa    MW: 42840.1 Da    PI: 7.4132
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007936mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.6e-37107166261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt GG++r vPvG+grrknk +
  Thhalv10007936m 107 PDKILPCPRCNSKDTKFCYYNNYNVNQPRHFCRNCQRYWTSGGSMRIVPVGSGRRKNKGW 166
                      7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-30103164IPR003851Zinc finger, Dof-type
PfamPF027011.5E-30109164IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.155111165IPR003851Zinc finger, Dof-type
PROSITE patternPS013610113149IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSELRDTPVK LFGWTITSSS SSVLPDSFDH GKENSSSSSS SSSPSLRLHM MNNQSETSNT  60
EQDYSSVQIT SDLNKEAKET SENSDDQHSE ITTSTTSEEK TIDLKKPDKI LPCPRCNSKD  120
TKFCYYNNYN VNQPRHFCRN CQRYWTSGGS MRIVPVGSGR RKNKGWVSTE QYMNIISENA  180
SNDYTNNYNS SSTKILSFES SEPFVTENSN HQSSHAKVTA DSVSKDFNNF QGFLPPQVTS  240
PVSPPWPYQY SPNPSFYQIP VYWGCAVPFC STLETSTCLG KRTRDETSFE TVRESKDASI  300
RARLDSQSQS INNEASVATK NHVWCPVPMK REKTEQFRFF IDGSDQTKSV NKKFVPQTYL  360
NLQANPAAMA RSMNFRESM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007936m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415958.10.0dof zinc finger protein DOF1.3 isoform X2
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLV4MRD70.0V4MRD7_EUTSA; Uncharacterized protein
STRINGXP_006415958.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-170Dof family protein