PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007959m
Common NameEUTSA_v10007959mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 374aa    MW: 43024 Da    PI: 8.087
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007959mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.5e-2784165286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W ++e++ Li +rr m+  ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k++++++    s +++y++++e
  Thhalv10007959m  84 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---GSAKMSYYKEIE 165
                      ********************************************************************94...566899***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-474145IPR009057Homeodomain-like
PROSITE profilePS500907.97976140IPR017877Myb-like domain
SMARTSM007170.007680142IPR001005SANT/Myb domain
CDDcd122037.25E-2982147No hitNo description
PfamPF138373.1E-2083166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MFVSDKPRPN DFYKDNNTNP STTARDMIID VTANGAGDLQ PHNHHHNHNH NHNHHHLQPQ  60
QILLGESSGE DHEVKAPKKR AETWVQDETR SLIMFRRGMD GLFNTSKSNK HLWEQISAKM  120
RDKGFDRSPT MCTDKWRNLL KEFKKAKHHD RGNGSAKMSY YKEIEDILRE RSKKASSTTQ  180
FSKSPNTPSA KVDSFMQFTD KANGRPALNL ERRLDHDGHP LAITTVDAVA ANGVPPWNWR  240
ETPGNVKFGD YTRRIGVDGS SEAIKETIRS AFGLRTRRAF WLEDEDQVVR CLDRDMPLGN  300
YLLHVDNGLA IRVCHYDESN QLPVHTEEKI FYTEEDYRDF LARRGWTCLQ VDGFRNIDNM  360
DDLQPGALYR GVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-5578163186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007959m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118101e-133AC011810.8 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence.
GenBankAC0271341e-133AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBankAK2283051e-133AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.
GenBankATHGT1e-133L36806.1 Arabidopsis thaliana (clone pDGT1) GT-1 mRNA.
GenBankBT0119791e-133BT011979.1 Arabidopsis thaliana At1g13450 mRNA sequence.
GenBankCP0026841e-133CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009039.10.0trihelix transcription factor GT-1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLV4KVV00.0V4KVV0_EUTSA; Uncharacterized protein
STRINGXP_006417121.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]