PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007960m
Common NameEUTSA_v10007960mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 373aa    MW: 42588.7 Da    PI: 4.6917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007960mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07317361245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                        W+t E +   ++ +++G + Wk+I  + +  ++Rt  ++k++++
  Thhalv10007960m 317 VYWSTAETLAVMKGYEKYGAN-WKRIKDENPilERRTNVNIKDKYR 361
                      57*****************99.***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.329311368IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-7311366IPR009057Homeodomain-like
SMARTSM007170.0063315366IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-6319365IPR009057Homeodomain-like
CDDcd116608.01E-12319365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MALSQWKEAI LEGIFIEIKD GVVEEKNLER LENLVEILHK EGSKVPESVK EAYSQVAVEC  60
TARCLGSERD AKVAYTEAIR SIWLRRIMPL CDKVSCLVTS DLLNSCRRLW MAHNDEKACE  120
TLMEENTREK ALVALRKVVT ELDPNHGYAY DDGNAMDESE EVESSEESRE TEPIVEASED  180
GDEDQDTEQE RPSGESEAES PLRQIKTISS AVVDRQLKKL RASKIDLMNA LEQGGPSTLH  240
NATITEQVND VANPSETTTL PRPSLMERRT TAQTFEWEDS IDDSDVEMGA DGEKNNKPRR  300
ERIVVSPLKK RNHREKVYWS TAETLAVMKG YEKYGANWKR IKDENPILER RTNVNIKDKY  360
RVEMRRKERN LE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007960m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195346e-51AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417869.10.0uncharacterized protein LOC18994185
RefseqXP_024007817.10.0uncharacterized protein LOC18994185
TrEMBLV4L1S30.0V4L1S3_EUTSA; Uncharacterized protein
STRINGXP_006417869.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.11e-153TRF-like 7