PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008049m
Common NameEUTSA_v10008049mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 354aa    MW: 41156.9 Da    PI: 7.06
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008049mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-1694139147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  Thhalv10008049m  94 RGHWRPAEDVKLKELVAIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 139
                      899*****************************.***********996 PP
2Myb_DNA-binding591.1e-18146189146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
  Thhalv10008049m 146 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 189
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.37289140IPR017930Myb domain
SuperFamilySSF466891.08E-2893187IPR009057Homeodomain-like
SMARTSM007173.9E-1493142IPR001005SANT/Myb domain
PfamPF002496.3E-1694139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2695147IPR009057Homeodomain-like
CDDcd001677.14E-1297138No hitNo description
PROSITE profilePS5129427.753141195IPR017930Myb domain
SMARTSM007174.1E-15145193IPR001005SANT/Myb domain
PfamPF002491.5E-15146188IPR001005SANT/Myb domain
CDDcd001673.84E-11148188No hitNo description
Gene3DG3DSA:1.10.10.601.7E-21148194IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFMSENQRWM DEIAAARREA SSWDFPFTDI NIQHRRHCNI SHDFEILKSP PGDNEEESNN  60
HNPNYSNSES GKKETTDSGQ SWSSSSSKPS SLGRGHWRPA EDVKLKELVA IYGPQNWNLI  120
AEKLQGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLMQA HRLYGNKWAM IARLFPGRTD  180
NSVKNHWHVI MARKYREHSS AYRRRKLMIN NPLKPHLPNH PNPNPNYHSF ISTNHFFTQP  240
FHELNLTHHL VNNASITTDH NQLVLPFHCF QGYESNETPM VVRMFGNQMM VGDNVGATSE  300
ELYNFPYIDS SSQETRMPNE PMSWIGMEVV DEEVVEKAKQ QPHFFDFLGL GTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-31921942104C-Myb DNA-Binding Domain
1msf_C3e-31921942104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008049m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348160.0AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds.
GenBankAY5195590.0AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ4462910.0DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ6528620.0DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415957.10.0transcription factor MYB117
SwissprotQ9LQX50.0MY117_ARATH; Transcription factor MYB117
TrEMBLV4K9G90.0V4K9G9_EUTSA; Uncharacterized protein
STRINGXP_006415957.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.21e-180myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]