PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008068m
Common NameEUTSA_v10008068mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 352aa    MW: 39745.1 Da    PI: 6.7262
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008068mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.15.6e-3157159196
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.. 87 
                      f+kv tpsdv+k++rlv+pk++ae++    ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  Thhalv10008068m  57 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDes 150
                      89***************************966677889*************************************************5434423 PP

                      SEE..EEEE CS
               B3  88 sefelvvkv 96 
                      ++ +l++ +
  Thhalv10008068m 151 ERSKLYIDW 159
                      555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-4250164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-3053145IPR015300DNA-binding pseudobarrel domain
CDDcd100174.89E-2755151No hitNo description
PfamPF023622.7E-2857160IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74857163IPR003340B3 DNA binding domain
SMARTSM010196.3E-2257163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGATGNNN NNLPMMMIPP PEKEHMFDKV  60
VTPSDVGKLN RLVIPKQHAE RYFPLDSSNN QNGTLLNFQD RNGKMWRFRY SYWNSSQSYV  120
MTKGWSRFVK EKKLDAGDIV SFQRGIGDES ERSKLYIDWR HRPDMSLVQT HQFGNFGFNF  180
NFPTTSQYSN RYHPLPEYNP VPIHRSLNIG NHQRSYYNNQ RQEFVGYGYG SLAGRCYYTG  240
SPLDQRNIVG SEPLVIESVP VVPGRLAPVL MPPLRPPPST AGKRLRLFGV NMECGNDYNQ  300
QEESWIVPRG EMGASSSSSA LQLNLSTDHD DDDDDQFAKK GKSSFSLDFN P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-63511652116B3 domain-containing transcription factor NGA1
5os9_B4e-63511652116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008068m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418368.10.0B3 domain-containing transcription factor NGA3
SwissprotQ9MAN10.0NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLV4MWI90.0V4MWI9_EUTSA; Uncharacterized protein
STRINGXP_006418368.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.10.0B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]