PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008118m
Common NameEUTSA_v10008118mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 342aa    MW: 38586.8 Da    PI: 5.3529
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008118mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1555114155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ ++ Aa+a++ a++k++g
  Thhalv10008118m  55 SVYRGVTRHRWTGRYEAHLWDkNSWNEtqsKKgRQVYLGAYDEEDAAARAYDLAALKYWG 114
                      78*******************888877877557**********99*************98 PP
2AP250.55e-16157208155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Thhalv10008118m 157 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 208
                      89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1655123IPR016177DNA-binding domain
PfamPF008472.4E-1255114IPR001471AP2/ERF domain
SMARTSM003805.2E-2556128IPR001471AP2/ERF domain
PROSITE profilePS5103220.52156122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-1656122IPR001471AP2/ERF domain
PRINTSPR003673.4E-65768IPR001471AP2/ERF domain
CDDcd000181.30E-24157218No hitNo description
SuperFamilySSF541711.31E-17157218IPR016177DNA-binding domain
PfamPF008471.5E-11157208IPR001471AP2/ERF domain
SMARTSM003809.5E-26158222IPR001471AP2/ERF domain
PROSITE profilePS5103217.965158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-17158216IPR001471AP2/ERF domain
PRINTSPR003673.4E-6198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNIAMEGSPV MEEISRRSKK TSVEDETGEE PASVVIKAKR KRRAQPRDAP PQRSSVYRGV  60
TRHRWTGRYE AHLWDKNSWN ETQSKKGRQV YLGAYDEEDA AARAYDLAAL KYWGRDTILN  120
FPLCNYEEDI KEMEIQTKEE YIGSLRRKSS GFSRGVSKYR GVAKHHHNGR WEARIGRVFG  180
NKYLYLGTYA TQEEAAIAYD VAAIEYRGLN AVTNFDISRY LKLPAPVNPT DAANHLLDIP  240
QSDPCPFINP DLESELSQSQ SSSEDNDDRK TKFLKSSPSS TDEVIGPSTP PEIAPPRRSF  300
PDDIQTYFGC QDSGKLTTEE DVIFGDLGSF LTPDFYSELD G*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008118m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459150.0AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338800.0AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416849.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV4KYU10.0V4KYU1_EUTSA; Uncharacterized protein
STRINGXP_006416849.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-174ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]