PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008125m
Common NameEUTSA_v10008125mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 341aa    MW: 38918.4 Da    PI: 8.7259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008125mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05182201120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C++C+k+F+r  n++ H+
  Thhalv10008125m 182 FSCSICSKTFNRYNNMQMHM 201
                      89*****************9 PP
2zf-C2H210.90.0014267289123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk    k + ++H +++
  Thhalv10008125m 267 FSCGKCGKALAVKGDWRTHEKNC 289
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-8162205No hitNo description
Gene3DG3DSA:3.30.160.602.9E-5182201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.492182209IPR007087Zinc finger, C2H2
SMARTSM003550.13182204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SMARTSM00355170230262IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.64E-5252287No hitNo description
Gene3DG3DSA:3.30.160.609.4E-4253287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190267287IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSLKNLKNGL CFDSPSFIEW LRAPSTSSPS VLFRMKTKDV ISRSNHQRQI NMLERSQFLC  60
QPQEPLNTNT TSIQCLPLLN KLMENKSQAL EDIKEEKDDD VVTLQIGLPN YHLGNSAEDD  120
SDTTSDHQKK HIKREIIEDG VVMKKRRKMK FDEEMNDPDM VVCGKRFWIP SPAQIHVGPM  180
QFSCSICSKT FNRYNNMQMH MWGHGSEFRK GADSLKGTTQ PAAILRLPCY CCAEGCKNNI  240
NHPRSKPLKD FRTLQTHYKR KHGSKPFSCG KCGKALAVKG DWRTHEKNCG KLWYCTCGSD  300
FKHKRSLKDH IRSFGNGHSP HPTLSFEGFD QEDTECVTTE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008125m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417709.10.0zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLV4L1A90.0V4L1A9_EUTSA; Uncharacterized protein
STRINGXP_006417709.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]