PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10008140m

Common Name

EUTSA_v10008140mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 337aa MW: 36107.7 Da PI: 9.8122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10008140m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	72	130	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e alkcprCds ntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n k+ Thhalv10008140m 72 EGALKCPRCDSINTKFCYYNNYNLTQPRHFCKGCRRYWTRGGALRNVPVGGGCRRNSKK 130 5689***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-32	57	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.413	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009625	Biological Process	response to insect
GO:0009753	Biological Process	response to jasmonic acid
GO:0010439	Biological Process	regulation of glucosinolate biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MPTNSNHQIH HQLHENGSIV NGDGLFSHQL IPPNPQNPNP NHHHAAVSGG HPARLGGSMA 60 ERARQAKAPP PEGALKCPRC DSINTKFCYY NNYNLTQPRH FCKGCRRYWT RGGALRNVPV 120 GGGCRRNSKK GKNGNSKSSS SSSKQSSQTV NTPSSSSGQL RTNHQFPFLP TLHNLTQLGG 180 IGLNLAATNG NNQAPHQIGS SLMNDLGFLH VGNGRNTSAP ITGNIHDSNN NNNENNLMAS 240 AGSLSPFALF DPTTGLYAFP NEGNIGNNVG VSFSSTSMVD SRAYQTAPVK MEEQPNLVNL 300 SRPVSGLTSP GNQTNQYFWN NSDFSGPSSN DHHQLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10008140m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417783.1	0.0	dof zinc finger protein DOF1.1 isoform X2
Swissprot	Q8L9V6	1e-172	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	V4MVE9	0.0	V4MVE9_EUTSA; Uncharacterized protein
STRING	XP_006417783.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.2	1e-152	Dof family protein

Link Out ? help Back to Top
Phytozome	Thhalv10008140m
Entrez Gene	18994106

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]