PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008235m
Common NameEUTSA_v10008235mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 319aa    MW: 36581.2 Da    PI: 6.8661
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008235mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.2e-301165155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrW++eLH+rF++av+qLGG++kAtPk ++ +m+++ Ltl+h kSHLQkYRl
  Thhalv10008235m 11 KPRLRWSCELHHRFIDAVNQLGGPNKATPKGLMGIMEIPELTLYHFKSHLQKYRL 65
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-27867IPR009057Homeodomain-like
SuperFamilySSF466894.3E-141068IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-201165IPR006447Myb domain, plants
PfamPF143791.1E-18114160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGNDHKARDT KPRLRWSCEL HHRFIDAVNQ LGGPNKATPK GLMGIMEIPE LTLYHFKSHL  60
QKYRLGISDR FVGKKQDVSS AAKSQECQSQ KDFGDQIDII VTEEKDDQPS KNLQIKEAIE  120
IQLEVQKKLH EQFEVQRQLQ VRIETHRKYL QSVFMKAQET LSGYKSLNLV IDDLYGEASM  180
ENRSCVSSCF SGLTQADEEG GEIEEEERFL RSKKSENRGI EPSRSSVDRS LTSSESSNIK  240
NEFDFQSVTR RSNELQLMEI KPVEVIERKK RRWNDVFCGE QPLRKRASGS EDGEDLGLSL  300
NSFKDIIRSC IQICRVYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-171164154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-171164154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-171164154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-171164154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008235m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008177.10.0myb family transcription factor PHL8 isoform X1
RefseqXP_024008178.10.0myb family transcription factor PHL8 isoform X1
SwissprotF4I2747e-99PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLV4KSL80.0V4KSL8_EUTSA; Uncharacterized protein
STRINGXP_006415961.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.14e-98G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]