PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008474m
Common NameEUTSA_v10008474mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 269aa    MW: 29278.8 Da    PI: 6.2564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008474mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-11151198455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Thhalv10008474m 151 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 198
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-18145216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.03E-11145202No hitNo description
PROSITE profilePS5088815.828147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18147216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDPGGMMNDA GTYNLAEIWP FPINGGATTV HSSMRSGVSF GGPNLAHQFA DSNLINCGDP  60
ARMSHALSQA VVAGISGARK RRDAAEDKVV SSSDGNDAND GDSKKQKTLG CEDEVCDGKA  120
ETGTSDQKKQ LPEPPKDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV  180
IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRMNPGVE VFPPKEFEQQ PFENPGMQFG  240
SQPTREYSRG ASPEWLHMQV GGGFERTS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008474m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417467.10.0transcription factor BPE
SwissprotQ0JXE71e-104BPE_ARATH; Transcription factor BPE
TrEMBLV4KDL10.0V4KDL1_EUTSA; Uncharacterized protein
STRINGXP_006417467.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-134BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]