PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008517m
Common NameEUTSA_v10008517mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 262aa    MW: 29560 Da    PI: 8.3547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008517mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08156203455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Thhalv10008517m 156 SHSLAERVRRGKINERLRCLQDMVPGC----YKSMGMATMLDEIINYVQSLQ 203
                      8*************************8....366999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.99E-11150207No hitNo description
SuperFamilySSF474591.23E-16150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-9158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MANFENLSSD FQTIAMDIYS SITQVTDLNN NSSNLHFQTF PPFSTSLDSL ILHHHHHRHQ  60
QQMLDFPGIS QDSGNTNNFS STSTFIHSNV GETKKRKASV QTLSSSENSG VSDSVDINTT  120
KTGCLRRCKR LKKKKEEEKE REVVHVRARR GQATDSHSLA ERVRRGKINE RLRCLQDMVP  180
GCYKSMGMAT MLDEIINYVQ SLQNQVEFLS MKLTAASSFY DFNSETDAVD SMQRAKAREA  240
VEMGRQTRDG SPVFHLSTWS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RLKKKKE
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008517m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172690.0AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBankAY1382530.0AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBankBT0052680.0BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416609.10.0transcription factor BEE 1
SwissprotQ8GZ131e-124BEE1_ARATH; Transcription factor BEE 1
TrEMBLV4KY510.0V4KY51_EUTSA; Uncharacterized protein
STRINGXP_006416609.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-117BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]