PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008620m
Common NameEUTSA_v10008620mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 244aa    MW: 27596.7 Da    PI: 7.4487
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008620mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-312578255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m++kgLt++hvkSHLQ+YR 
  Thhalv10008620m 25 PRLRWTPELHRSFVHAVDLLGGEYKATPKLVLKIMDMKGLTISHVKSHLQMYRG 78
                     8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.232181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-282178IPR009057Homeodomain-like
SuperFamilySSF466899.14E-152577IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-222578IPR006447Myb domain, plants
PfamPF002496.0E-82677IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRCGRSSDG GNIGGVRPYV RSPVPRLRWT PELHRSFVHA VDLLGGEYKA TPKLVLKIMD  60
MKGLTISHVK SHLQMYRGSK PTLFGRPEES SSSSSRRRRR QDNEEDHLHD NLSVHARNDC  120
LLGFHSFNFR EQTSATYNDD DDFLNIMNME RTKTFAGNGE SIKFQSHHFL EGHKEEEEEE  180
LSLSLSLNHP HNYQQRWRSN ASSSLSETSE AFSSSSAPFI FRDCFASSKI DLNLSLSFSL  240
LGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-192680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-192680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-192680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-192680357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008620m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416996.11e-180putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D91e-128MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLV4KVH21e-179V4KVH2_EUTSA; Uncharacterized protein
STRINGXP_006416996.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-115G2-like family protein