PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008781m
Common NameEUTSA_v10008781mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 208aa    MW: 23165.2 Da    PI: 5.2797
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008781mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.81.6e-42351341100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l
  Thhalv10008781m  35 PCAACKILRRRCGEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSELQAQL 128
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++ e
  Thhalv10008781m 129 AKAQVE 134
                      *99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.01134135IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4235132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLDMENKGDA SAAIISASSN SSHPPPLSPR VVLSPCAACK ILRRRCGEKC VLAPYFPPTE  60
PAKFTIAHRV FGASNIIKFL QELPESQRTD AVNSMVYEAG ARIRDPVYGC AGAIYHLQRQ  120
VSELQAQLAK AQVEIVNMQS QRSNLLELIH NYMDQPKQEQ HYMSFGSSFE NCDEFIGSPD  180
EESNDFGFLK DNSNTNLSML WCDPFWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-413413710113LOB family transfactor Ramosa2.1
5ly0_B7e-413413710113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008781m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738411e-148AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417754.11e-155LOB domain-containing protein 1
SwissprotQ9SK081e-100LBD11_ARATH; LOB domain-containing protein 11
TrEMBLV4L1E71e-154V4L1E7_EUTSA; Uncharacterized protein
STRINGXP_006417754.11e-155(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-98LOB domain-containing protein 11