PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008787m
Common NameEUTSA_v10008787mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YC
Protein Properties Length: 207aa    MW: 22907.7 Da    PI: 9.5278
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008787mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.57.8e-15991861299
            NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                       ++d k  ++P+ ri++i+++d+   +i  +a  l+ ka elfi  ++  ++  + + k++ ++   ++++v++ + ++fl d vp++
  Thhalv10008787m  99 GVEDAKTIRFPMNRIRRIMRSDNTAPQIMQDAVFLVNKATELFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 186
                      56899999*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.65E-1998185IPR009072Histone-fold
PfamPF008081.7E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-24108185IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVSSKKPNKE KKPKSDGVNK AGGRVSGSKA EKKTPNKAKS GAIVKKDPEV YEISESSSSG  60
SVEEARRDES KKSNGVVKNG CNGKGDKRRK NGEEDDGGGV EDAKTIRFPM NRIRRIMRSD  120
NTAPQIMQDA VFLVNKATEL FIERFSEEAY ESSVQDKKKF IHYKHLSSVV SNEERYEFLA  180
DCVPEKLKAE VALEEWERGM TVTDAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008787m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290119e-98AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07.
GenBankAK2292669e-98AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22.
GenBankAY0868159e-98AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence.
GenBankBT0252669e-98BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417743.11e-148DNA polymerase epsilon subunit C
TrEMBLV4MVC41e-147V4MVC4_EUTSA; Uncharacterized protein
STRINGXP_006417743.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.15e-64nuclear factor Y, subunit C10