PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008824m
Common NameEUTSA_v10008824mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 198aa    MW: 22099.4 Da    PI: 6.2447
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008824mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.6e-2174134257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+t++ql++Le+ +e+ + +p++++++e+A+ l    +++e++V++WFqNrRa+ k+
  Thhalv10008824m  74 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATDLsehgQISETNVYNWFQNRRARSKR 134
                      89*****************99**************************************97 PP
2Wus_type_Homeobox101.56.1e-3373136265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPt++Q++iLe++y++G  tPn+++i++i++ L+e+G+i+++NV++WFQNr+aR+++kq
    Thhalv10008824m  73 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATDLSEHGQISETNVYNWFQNRRARSKRKQ 136
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-1667139IPR009057Homeodomain-like
PROSITE profilePS5007114.65770135IPR001356Homeobox domain
SMARTSM003891.8E-1372139IPR001356Homeobox domain
SuperFamilySSF466894.28E-1872139IPR009057Homeodomain-like
CDDcd000868.58E-1474136No hitNo description
PfamPF000461.7E-1874134IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MERGSQNGAY DVRVMTEEQM ELLRKQIAVY AVICDQLVSL HNSLSSFSSG TNSMSGGYFD  60
PMRASSSAHK ISSRHRWTPT STQLQILESI YEEGSGTPNR RRIREIATDL SEHGQISETN  120
VYNWFQNRRA RSKRKQPQTT TTTDVAEDAA VTTEERTLCG DSGGFESYKH ILFPSPDLGI  180
EHLLSKGEIS GEQNSYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008824m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416371.11e-146WUSCHEL-related homeobox 14
SwissprotQ9LM841e-113WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBLV4KTV11e-145V4KTV1_EUTSA; Uncharacterized protein
STRINGXP_006416371.11e-146(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122111732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.11e-90WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]