PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10008861m

Common Name

EUTSA_v10008858mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

YABBY

Protein Properties

Length: 189aa MW: 21121.9 Da PI: 9.9083

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10008861m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	248.1	1.7e-76	2	164	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +++ sse+vCyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++++a ++++l+++++ + v+++++ s ++++ st+ Thhalv10008861m 2 SIDLSSERVCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPP-IHQDLQHKQHITSPVTRKDFGSSSRSSNHFSTT 94 67789***********************************************999988.455555555555555566665555555544444 PP YABBY 96 vsseklsen.edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 sen +++++pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Thhalv10008861m 95 L-----SENvDRDQAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 164 4.....44414456788888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.6E-73	6	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.27E-7	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSIDLSSERV CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSAP 60 PIHQDLQHKQ HITSPVTRKD FGSSSRSSNH FSTTLSENVD RDQAPRMPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKAGNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA 180 GQKSNGYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10008861m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417684.1	1e-141	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-121	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	V4L188	1e-139	V4L188_EUTSA; Uncharacterized protein
STRING	XP_006417685.1	1e-134	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-117	YABBY family protein

Link Out ? help Back to Top
Phytozome	Thhalv10008861m
Entrez Gene	18994028

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]