PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008930m
Common NameEUTSA_v10008930mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 170aa    MW: 19852.5 Da    PI: 9.0476
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008930mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.41.9e-24353258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     ++++Y eC++NhAa+lG++avDGC+E+ +       a++  CaACgCHR++HRr  +
  Thhalv10008930m  3 SSCVYSECMRNHAAKLGSYAVDGCREYSQP------ATGDLCAACGCHRSYHRRIDV 53
                     5789***********************998......57789*************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-20450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-17650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-15750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.49751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.2E-1793166IPR009057Homeodomain-like
SuperFamilySSF466891.34E-799165IPR009057Homeodomain-like
TIGRFAMsTIGR015656.9E-30107166IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQSSCVYSEC MRNHAAKLGS YAVDGCREYS QPATGDLCAA CGCHRSYHRR IDVKSSGQIT  60
RAPFPFTSLR RVKQLARLKW RATEEREEEE EEEDTEETST EEMMTVKRRR KSKFTAEQKE  120
AMRDYAVKLG WTLKDKRAIR EEIRVFCEGI GVSRYLFKTW VNNNKKFYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008930m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416985.11e-124zinc-finger homeodomain protein 14
SwissprotQ9LQW31e-92ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLV4L6F01e-123V4L6F0_EUTSA; Uncharacterized protein
STRINGXP_006416985.11e-124(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.19e-93homeobox protein 32