PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008989m
Common NameEUTSA_v10008989mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LSD
Protein Properties Length: 157aa    MW: 16157 Da    PI: 8.201
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008989mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.6e-153761125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP GA+sV+Ca+C++V
  Thhalv10008989m 37 CSGCRNLLMYPVGATSVCCAVCNAV 61
                     ************************9 PP
2zf-LSD146.65.4e-1576100125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggC+tlL+Y rGA+sV+C++C+tV
  Thhalv10008989m  76 CGGCHTLLMYIRGATSVQCSCCHTV 100
                      ************************9 PP
3zf-LSD138.61.8e-12114138125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C  lL+Y +GA+sV+Ca+C++V
  Thhalv10008989m 114 CGNCWMLLMYQYGARSVKCAVCNFV 138
                      ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.8E-143464IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-113761IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.79E-637135IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.107.5E-451135No hitNo description
TIGRFAMsTIGR010539.8E-1573102IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1276100IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-10111141IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-12114138IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPVPLAPYPS PPPPALAPSF TPPPANGSTG GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA  60
VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA QVNCGNCWML  120
LMYQYGARSV KCAVCNFVTS VGVSSLINTL MKKKSV*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008989m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0576751e-150AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY1169511e-150AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY3496181e-150AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415176.17e-99protein LOL1 isoform X1
RefseqXP_006415177.17e-99protein LOL1 isoform X1
SwissprotQ93ZB13e-81LOL1_ARATH; Protein LOL1
TrEMBLV4MPJ91e-107V4MPJ9_EUTSA; Uncharacterized protein
STRINGXP_006415178.11e-107(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-66lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]