PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009032m

Common Name

EUTSA_v10009032mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NF-YA

Protein Properties

Length: 146aa MW: 16411.5 Da PI: 9.9594

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009032m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	108	7.3e-34	55	111	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++k+ ksrkpylheSRh hA+rRpRg+gGrF Thhalv10009032m 55 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-VKSRKPYLHESRHLHAIRRPRGCGGRF 111 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.2E-38	53	114	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.642	54	114	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-28	56	111	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.8E-24	57	79	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	59	79	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.8E-24	88	111	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKAPGHYPYP DPYYRSIFAP PCDAQAFSPR PYAGIHLQLM GIQQQGVPLP SDAVEEPVFV 60 NAKQYHGILR RRQSRAKLES QNKVVKSRKP YLHESRHLHA IRRPRGCGGR FLNAKKEDER 120 QEDSHEENSN LSSDKSAMAT SSGTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-23	54	118	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009032m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004274	1e-119	BT004274.1 Arabidopsis thaliana clone RAFL15-46-O22 (R50095) putative transcription factor (At1g30500) mRNA, complete cds.
GenBank	BT005561	1e-119	BT005561.1 Arabidopsis thaliana clone U50095 putative transcription factor (At1g30500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024008366.1	1e-103	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	1e-84	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	V4KUX1	1e-103	V4KUX1_EUTSA; Uncharacterized protein
STRING	XP_006415464.1	1e-104	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	6e-87	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Thhalv10009032m
Entrez Gene	18992049

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]